Detailed information of SNP:
|
SNP ID:
sf0911046828(Gbrowse)
Chromosome: chr09 Position: 11046828 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 85.13% | 14.87% |
| All Indica | 792 | 94.07% | 5.93% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911046828 | T->A | INTERGENIC | None |