Detailed information of SNP:
|
SNP ID:
sf0911048758(Gbrowse)
Chromosome: chr09 Position: 11048758 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 83.96% | 16.04% |
| All Indica | 795 | 90.57% | 9.43% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911048758 | A->G | LOC_Os09g18030(LOC_Os09g18030.1) | INTRON |