Detailed information of SNP:
|
SNP ID:
sf0911049032(Gbrowse)
Chromosome: chr09 Position: 11049032 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 86.30% | 13.70% |
| All Indica | 790 | 94.56% | 5.44% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911049032 | T->A | LOC_Os09g18030(LOC_Os09g18030.1) | INTRON |