Detailed information of SNP:
|
SNP ID:
sf0911060672(Gbrowse)
Chromosome: chr09 Position: 11060672 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.67% | 12.33% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911060672 | G->A | INTERGENIC | None |