Detailed information of SNP:
|
SNP ID:
sf0911065865(Gbrowse)
Chromosome: chr09 Position: 11065865 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 87.39% | 12.61% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911065865 | T->C | INTERGENIC | None |