Detailed information of SNP:
|
SNP ID:
sf0911066539(Gbrowse)
Chromosome: chr09 Position: 11066539 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.67% | 12.33% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911066539 | C->T | INTERGENIC | None |