Detailed information of SNP:
|
SNP ID:
sf0911097438(Gbrowse)
Chromosome: chr09 Position: 11097438 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 94.40% | 5.60% |
| All Indica | 767 | 90.74% | 9.26% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 364 | 92.31% | 7.69% |
| Indica II | 199 | 86.93% | 13.07% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911097438 | A->T | LOC_Os09g18110(LOC_Os09g18110.1) | INTRON |