Detailed information of SNP:
|
SNP ID:
sf0911113712(Gbrowse)
Chromosome: chr09 Position: 11113712 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 61.95% | 38.05% |
| All Indica | 766 | 35.51% | 64.49% |
| All Japonica | 492 | 98.58% | 1.42% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 369 | 28.73% | 71.27% |
| Indica II | 191 | 54.45% | 45.55% |
| Indica Intermediate | 206 | 30.10% | 69.90% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911113712 | G->A | INTERGENIC | None |