Detailed information of SNP:
|
SNP ID:
sf0911114829(Gbrowse)
Chromosome: chr09 Position: 11114829 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 50.07% | 49.93% |
| All Indica | 772 | 20.34% | 79.66% |
| All Japonica | 489 | 95.50% | 4.50% |
| Aus | 64 | 51.56% | 48.44% |
| Indica I | 369 | 18.16% | 81.84% |
| Indica II | 198 | 28.28% | 71.72% |
| Indica Intermediate | 205 | 16.59% | 83.41% |
| Temperate Japonica | 331 | 94.56% | 5.44% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911114829 | T->C | INTERGENIC | None |