Detailed information of SNP:
|
SNP ID:
sf0911163559(Gbrowse)
Chromosome: chr09 Position: 11163559 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 69.89% | 30.11% |
| All Indica | 791 | 90.27% | 9.73% |
| All Japonica | 494 | 33.00% | 67.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 210 | 84.76% | 15.24% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 334 | 29.94% | 70.06% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911163559 | A->G | INTERGENIC | None |