Detailed information of SNP:
|
SNP ID:
sf0911167189(Gbrowse)
Chromosome: chr09 Position: 11167189 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 96.59% | 3.41% |
| All Indica | 787 | 94.03% | 5.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 206 | 90.29% | 9.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911167189 | G->A | LOC_Os09g18220(LOC_Os09g18220.1) | Non-Synonymous SNP |