Detailed information of SNP:
|
SNP ID:
sf0911207643(Gbrowse)
Chromosome: chr09 Position: 11207643 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 93.42% | 6.58% |
| All Indica | 797 | 91.72% | 8.28% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911207643 | C->T | LOC_Os09g18260(LOC_Os09g18260.1) | Synonymous |