Detailed information of SNP:
|
SNP ID:
sf0911231993(Gbrowse)
Chromosome: chr09 Position: 11231993 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 92.78% | 7.22% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 28.57% | 71.43% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911231993 | C->T | LOC_Os09g18310(LOC_Os09g18310.1) | INTRON |