Detailed information of SNP:
|
SNP ID:
sf0911245064(Gbrowse)
Chromosome: chr09 Position: 11245064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.78% | 10.22% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911245064 | G->A | INTERGENIC | None |