Detailed information of SNP:
|
SNP ID:
sf0911336325(Gbrowse)
Chromosome: chr09 Position: 11336325 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 96.53% | 3.47% |
| All Indica | 761 | 96.85% | 3.15% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 46 | 65.22% | 34.78% |
| Indica I | 362 | 97.24% | 2.76% |
| Indica II | 203 | 95.57% | 4.43% |
| Indica Intermediate | 196 | 97.45% | 2.55% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911336325 | C->T | INTERGENIC | None |