Detailed information of SNP:
|
SNP ID:
sf0911385354(Gbrowse)
Chromosome: chr09 Position: 11385354 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 92.73% | 7.27% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 494 | 98.18% | 1.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 332 | 97.29% | 2.71% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911385354 | C->T | INTERGENIC | None |