Detailed information of SNP:
|
SNP ID:
sf0911385407(Gbrowse)
Chromosome: chr09 Position: 11385407 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 89.74% | 10.26% |
| All Indica | 777 | 84.68% | 15.32% |
| All Japonica | 486 | 96.71% | 3.29% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 364 | 84.62% | 15.38% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 204 | 79.90% | 20.10% |
| Temperate Japonica | 328 | 95.43% | 4.57% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911385407 | T->C | INTERGENIC | None |