Detailed information of SNP:
|
SNP ID:
sf0911406066(Gbrowse)
Chromosome: chr09 Position: 11406066 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 79.40% | 20.60% |
| All Indica | 774 | 65.76% | 34.24% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 360 | 74.44% | 25.56% |
| Indica II | 208 | 62.50% | 37.50% |
| Indica Intermediate | 206 | 53.88% | 46.12% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911406066 | T->A | INTERGENIC | None |