Detailed information of SNP:
|
SNP ID:
sf0911436018(Gbrowse)
Chromosome: chr09 Position: 11436018 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.42% | 4.58% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911436018 | G->T | INTERGENIC | None |