Detailed information of SNP:
|
SNP ID:
sf0911440486(Gbrowse)
Chromosome: chr09 Position: 11440486 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 66.30% | 33.70% |
| All Indica | 780 | 51.79% | 48.21% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 57 | 28.07% | 71.93% |
| Indica I | 365 | 66.85% | 33.15% |
| Indica II | 212 | 34.43% | 65.57% |
| Indica Intermediate | 203 | 42.86% | 57.14% |
| Temperate Japonica | 334 | 93.11% | 6.89% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911440486 | C->T | INTERGENIC | None |