Detailed information of SNP:
|
SNP ID:
sf0911579903(Gbrowse)
Chromosome: chr09 Position: 11579903 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 95.45% | 4.55% |
| All Indica | 778 | 93.96% | 6.04% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 56 | 76.79% | 23.21% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 205 | 86.83% | 13.17% |
| Indica Intermediate | 202 | 91.58% | 8.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911579903 | G->A | LOC_Os09g19350(LOC_Os09g19350.1) | INTRON |