Detailed information of SNP:
|
SNP ID:
sf0911579907(Gbrowse)
Chromosome: chr09 Position: 11579907 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 96.81% | 3.19% |
| All Indica | 776 | 96.52% | 3.48% |
| All Japonica | 491 | 99.39% | 0.61% |
| Aus | 55 | 76.36% | 23.64% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 204 | 95.59% | 4.41% |
| Indica Intermediate | 201 | 92.54% | 7.46% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911579907 | G->A | LOC_Os09g19350(LOC_Os09g19350.1) | INTRON |