Detailed information of SNP:
SNP ID:
sf0911589177(Gbrowse)
Chromosome: chr09 Position: 11589177 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1413 | 97.10% | 2.90% |
All Indica | 794 | 95.21% | 4.79% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 373 | 94.37% | 5.63% |
Indica II | 212 | 98.11% | 1.89% |
Indica Intermediate | 209 | 93.78% | 6.22% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0911589177 | C->T | INTERGENIC | None |