Detailed information of SNP:
|
SNP ID:
sf0911596490(Gbrowse)
Chromosome: chr09 Position: 11596490 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1324 | 98.72% | 1.28% |
| All Indica | 724 | 99.86% | 0.14% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 54 | 94.44% | 5.56% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 157 | 99.36% | 0.64% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911596490 | G->A | INTERGENIC | None |