Detailed information of SNP:
|
SNP ID:
sf0911636911(Gbrowse)
Chromosome: chr09 Position: 11636911 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 96.59% | 3.41% |
| All Indica | 759 | 94.07% | 5.93% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 95.24% | 4.76% |
| Indica II | 206 | 89.81% | 10.19% |
| Indica Intermediate | 196 | 96.43% | 3.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911636911 | C->T | INTERGENIC | None |