Detailed information of SNP:



SNP ID: sf0911637104(Gbrowse)

Chromosome: chr09

Position: 11637104
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1389 94.53% 5.47%
All Indica770 90.26% 9.74%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I362 93.09% 6.91%
Indica II210 86.19% 13.81%
Indica Intermediate198 89.39% 10.61%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0911637104 A->T LOC_Os09g19440(LOC_Os09g19440.1) INTRON