Detailed information of SNP:
|
SNP ID:
sf0911637104(Gbrowse)
Chromosome: chr09 Position: 11637104 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 94.53% | 5.47% |
| All Indica | 770 | 90.26% | 9.74% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 93.09% | 6.91% |
| Indica II | 210 | 86.19% | 13.81% |
| Indica Intermediate | 198 | 89.39% | 10.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911637104 | A->T | LOC_Os09g19440(LOC_Os09g19440.1) | INTRON |