Detailed information of SNP:
|
SNP ID:
sf0911694607(Gbrowse)
Chromosome: chr09 Position: 11694607 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 97.24% | 2.76% |
| All Indica | 773 | 96.90% | 3.10% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 56 | 80.36% | 19.64% |
| Indica I | 365 | 97.81% | 2.19% |
| Indica II | 202 | 97.52% | 2.48% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911694607 | T->C | INTERGENIC | None |