Detailed information of SNP:
|
SNP ID:
sf0911768543(Gbrowse)
Chromosome: chr09 Position: 11768543 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 51.36% | 48.64% |
| All Indica | 785 | 73.25% | 26.75% |
| All Japonica | 457 | 10.94% | 89.06% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 203 | 38.92% | 61.08% |
| Indica Intermediate | 207 | 74.40% | 25.60% |
| Temperate Japonica | 309 | 12.94% | 87.06% |
| Tropical Japonica | 84 | 3.57% | 96.43% |
| Japonica Intermediate | 64 | 10.94% | 89.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 30.00% | 70.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911768543 | G->A | LOC_Os09g19670(LOC_Os09g19670.1) | INTRON |