Detailed information of SNP:
|
SNP ID:
sf0911892006(Gbrowse)
Chromosome: chr09 Position: 11892006 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.36% | 46.64% |
| All Indica | 798 | 25.94% | 74.06% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 63 | 17.46% | 82.54% |
| Indica I | 375 | 9.87% | 90.13% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 210 | 19.52% | 80.48% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911892006 | T->C | LOC_Os09g19870(LOC_Os09g19870.1) | INTRON |