Detailed information of SNP:
|
SNP ID:
sf0912019991(Gbrowse)
Chromosome: chr09 Position: 12019991 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 95.43% | 4.57% |
| All Indica | 730 | 93.29% | 6.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 55 | 78.18% | 21.82% |
| Indica I | 328 | 90.55% | 9.45% |
| Indica II | 202 | 97.52% | 2.48% |
| Indica Intermediate | 200 | 93.50% | 6.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912019991 | C->T | INTERGENIC | None |