Detailed information of SNP:
|
SNP ID:
sf0912022385(Gbrowse)
Chromosome: chr09 Position: 12022385 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 58.52% | 41.48% |
| All Indica | 778 | 36.89% | 63.11% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 363 | 19.01% | 80.99% |
| Indica II | 210 | 68.10% | 31.90% |
| Indica Intermediate | 205 | 36.59% | 63.41% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912022385 | T->C | INTERGENIC | None |