Detailed information of SNP:
|
SNP ID:
sf0912039575(Gbrowse)
Chromosome: chr09 Position: 12039575 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 94.82% | 5.18% |
| All Indica | 774 | 91.60% | 8.40% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 362 | 88.40% | 11.60% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 202 | 92.57% | 7.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912039575 | C->T | INTERGENIC | None |