Detailed information of SNP:
|
SNP ID:
sf0912051072(Gbrowse)
Chromosome: chr09 Position: 12051072 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 63.85% | 36.15% |
| All Indica | 779 | 83.44% | 16.56% |
| All Japonica | 497 | 31.39% | 68.61% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 367 | 80.38% | 19.62% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 202 | 82.18% | 17.82% |
| Temperate Japonica | 335 | 25.67% | 74.33% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912051072 | A->C | INTERGENIC | None |