Detailed information of SNP:
|
SNP ID:
sf0912053344(Gbrowse)
Chromosome: chr09 Position: 12053344 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 57.94% | 42.06% |
| All Indica | 760 | 75.66% | 24.34% |
| All Japonica | 496 | 30.44% | 69.56% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 355 | 73.52% | 26.48% |
| Indica II | 206 | 85.92% | 14.08% |
| Indica Intermediate | 199 | 68.84% | 31.16% |
| Temperate Japonica | 334 | 24.85% | 75.15% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912053344 | A->G | LOC_Os09g20120(LOC_Os09g20120.1) | Non-Synonymous SNP |