Detailed information of SNP:
|
SNP ID:
sf0912076330(Gbrowse)
Chromosome: chr09 Position: 12076330 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 88.91% | 11.09% |
| All Indica | 762 | 80.45% | 19.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 363 | 79.61% | 20.39% |
| Indica II | 201 | 88.56% | 11.44% |
| Indica Intermediate | 198 | 73.74% | 26.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912076330 | G->A | INTERGENIC | None |