Detailed information of SNP:
|
SNP ID:
sf0912104770(Gbrowse)
Chromosome: chr09 Position: 12104770 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1327 | 55.16% | 44.84% |
| All Indica | 793 | 52.21% | 47.79% |
| All Japonica | 416 | 56.01% | 43.99% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 374 | 52.67% | 47.33% |
| Indica II | 209 | 74.64% | 25.36% |
| Indica Intermediate | 210 | 29.05% | 70.95% |
| Temperate Japonica | 263 | 34.60% | 65.40% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 60 | 85.00% | 15.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912104770 | G->A | INTERGENIC | None |