Detailed information of SNP:
|
SNP ID:
sf0912104869(Gbrowse)
Chromosome: chr09 Position: 12104869 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 94.45% | 5.55% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 432 | 83.80% | 16.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 276 | 76.45% | 23.55% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912104869 | T->A | INTERGENIC | None |