Detailed information of SNP:
|
SNP ID:
sf0912105234(Gbrowse)
Chromosome: chr09 Position: 12105234 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 72.98% | 27.02% |
| All Indica | 797 | 54.20% | 45.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 375 | 54.93% | 45.07% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 209 | 29.19% | 70.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912105234 | A->G | INTERGENIC | None |