Detailed information of SNP:
|
SNP ID:
sf0912151485(Gbrowse)
Chromosome: chr09 Position: 12151485 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 66.97% | 33.03% |
| All Indica | 799 | 51.94% | 48.06% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 53.07% | 46.93% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912151485 | T->C | INTERGENIC | None |