Detailed information of SNP:
|
SNP ID:
sf0912153975(Gbrowse)
Chromosome: chr09 Position: 12153975 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 97.16% | 2.84% |
| All Indica | 788 | 99.49% | 0.51% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 35 | 60.00% | 40.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 203 | 99.01% | 0.99% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912153975 | A->G | INTERGENIC | None |