Detailed information of SNP:
|
SNP ID:
sf0912171575(Gbrowse)
Chromosome: chr09 Position: 12171575 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 95.33% | 4.67% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 87.60% | 12.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912171575 | C->T | LOC_Os09g20284(LOC_Os09g20284.1) | INTRON |