Detailed information of SNP:
|
SNP ID:
sf0912183178(Gbrowse)
Chromosome: chr09 Position: 12183178 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.31% | 48.69% |
| All Indica | 798 | 21.55% | 78.45% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 210 | 10.00% | 90.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912183178 | G->A | INTERGENIC | None |