Detailed information of SNP:
|
SNP ID:
sf0912184686(Gbrowse)
Chromosome: chr09 Position: 12184686 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.99% | 49.01% |
| All Indica | 798 | 21.30% | 78.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 6.93% | 93.07% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 210 | 10.00% | 90.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912184686 | T->C | INTERGENIC | None |