Detailed information of SNP:



SNP ID: sf0912188734(Gbrowse)

Chromosome: chr09

Position: 12188734
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 54.73% 45.27%
All Indica799 23.40% 76.60%
All Japonica497 97.38% 2.62%
Aus66 95.45% 4.55%
Indica I375 6.93% 93.07%
Indica II213 63.85% 36.15%
Indica Intermediate211 11.85% 88.15%
Temperate Japonica335 97.61% 2.39%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 71.43% 28.57%
Intermediate40 77.50% 22.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0912188734 G->A LOC_Os09g20310(LOC_Os09g20310.1) Non-Synonymous SNP