Detailed information of SNP:
SNP ID:
sf0912188734(Gbrowse)
Chromosome: chr09 Position: 12188734 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1416 | 54.73% | 45.27% |
All Indica | 799 | 23.40% | 76.60% |
All Japonica | 497 | 97.38% | 2.62% |
Aus | 66 | 95.45% | 4.55% |
Indica I | 375 | 6.93% | 93.07% |
Indica II | 213 | 63.85% | 36.15% |
Indica Intermediate | 211 | 11.85% | 88.15% |
Temperate Japonica | 335 | 97.61% | 2.39% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 94.12% | 5.88% |
Group VI/Aromatic | 14 | 71.43% | 28.57% |
Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0912188734 | G->A | LOC_Os09g20310(LOC_Os09g20310.1) | Non-Synonymous SNP |