Detailed information of SNP:
|
SNP ID:
sf0912192100(Gbrowse)
Chromosome: chr09 Position: 12192100 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 50.46% | 49.54% |
| All Indica | 799 | 78.72% | 21.28% |
| All Japonica | 496 | 3.63% | 96.37% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912192100 | T->C | LOC_Os09g20320(LOC_Os09g20320.1) | INTRON |