Detailed information of SNP:
|
SNP ID:
sf0912194781(Gbrowse)
Chromosome: chr09 Position: 12194781 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.99% | 49.01% |
| All Indica | 799 | 20.28% | 79.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 5.07% | 94.93% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 9.95% | 90.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912194781 | G->C | INTERGENIC | None |