Detailed information of SNP:
|
SNP ID:
sf0912194796(Gbrowse)
Chromosome: chr09 Position: 12194796 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.17% | 48.83% |
| All Indica | 799 | 79.60% | 20.40% |
| All Japonica | 494 | 3.44% | 96.56% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 42.72% | 57.28% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 332 | 3.61% | 96.39% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912194796 | T->C | INTERGENIC | None |