Detailed information of SNP:
|
SNP ID:
sf0912206564(Gbrowse)
Chromosome: chr09 Position: 12206564 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.55% | 45.45% |
| All Indica | 799 | 21.03% | 78.97% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 2.67% | 97.33% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 10.90% | 89.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912206564 | C->A | LOC_Os09g20340(LOC_Os09g20340.1) | Non-Synonymous SNP |