Detailed information of SNP:
|
SNP ID:
sf0912242493(Gbrowse)
Chromosome: chr09 Position: 12242493 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1279 | 93.75% | 6.25% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 377 | 79.58% | 20.42% |
| Aus | 57 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 244 | 71.31% | 28.69% |
| Tropical Japonica | 80 | 98.75% | 1.25% |
| Japonica Intermediate | 53 | 88.68% | 11.32% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912242493 | T->C | LOC_Os09g20380(LOC_Os09g20380.1) | INTRON |