Detailed information of SNP:
|
SNP ID:
sf0912249066(Gbrowse)
Chromosome: chr09 Position: 12249066 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1323 | 95.92% | 4.08% |
| All Indica | 787 | 100.00% | 0.00% |
| All Japonica | 451 | 89.36% | 10.64% |
| Aus | 36 | 97.22% | 2.78% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 95.38% | 4.62% |
| Tropical Japonica | 68 | 70.59% | 29.41% |
| Japonica Intermediate | 58 | 77.59% | 22.41% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0912249066 | T->A | INTERGENIC | None |